Novogene AMEA
  • Novogene AMEA
  • Genomics
    • Human Whole Genome Sequencing
    • Plant and Animal Whole Genome Sequencing
    • Microbial Whole Genome Sequencing
    • Plant and Animal De novo Sequencing
    • Microbial De novo Sequencing
    • Shotgun Metagenomics Sequencing
    • Amplicon Sequencing
    • Whole Exome Sequencing
    Transcriptomics
    • mRNA Sequencing
    • Total RNA Sequencing
    • Full-Length Transcriptome Sequencing
    • Whole Transcriptome Sequencing
    • Small RNA Sequencing
    • Circular RNA Sequencing
    • Metatranscriptome Sequencing
    • Prokaryotic RNA Sequencing
    Single Cell & Spatial Omics
    • Single Cell Gene Expression
    • Single Cell Immune Profiling Sequencing
    • Single Cell Long Read Transcriptome
    • Visium HD Spatial Gene Expression
    • Stereo-Seq Spatial Gene Expression
    • Xenium In Situ Spatial Transcriptome
    Epigenomics
    • Whole Genome Bisulfite Sequencing (WGBS)
    • Directed DNA Methylation Sequencing (DM-Seq) NEW
    • Reduced Representation Bisulfite Sequencing (RRBS)
    • Chromatin Immunoprecipitation Sequencing (ChIP-seq)
    • RNA Immunoprecipitation Sequencing (RIP-seq)
    • Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq)

    Premade Library

    • Sequencing Only on Illumina Sequencer
    • Sequencing Only on PacBio Sequencer
    Proteomics and Metabolomics
    • Olink Proteomics
    • Quantitative Proteomics
    • Untargeted Metabolomics
  • PromotionsPromotions
    • Platforms
    • Automated Delivery Platform (Falcon)
    • Bioinformatics Analysis Tool (NovoMagic)
    • Customer Service System (CSS)
    • Brochures
    • Case Studies
    • Webinar
    • Blog
    • Sample Guidelines
    • Cancer Research
    • Immuno-oncology
    • Agrigenomics
    • Environment
    • Food Science
    • Human Microbiome
    • Plant and Animal Microbiome
    • Drug Discovery and Development
    • Rare and Complex Diseases
    • About Us
    • Our Locations
    • News
    • Careers
  • Contact UsContact Us

ServicesServices menu

SupportSupport menu

CompanyCompany menu

Services
Whole Genome SequencingDe novo SequencingAmplicon SequencingShotgun Metagenomic SequencingDirected DNA Methylation Sequencing (DM-Seq)mRNA SequencingSingle Cell Gene ExpressionVisium HD Spatial Gene ExpressionXenium In Situ Spatial TranscriptomeOlink ProteomicsUntargeted Metabolomics
Support
NovoMagic Bioinformatics Analysis ToolCustomer Service SystemFalcon Intelligent Delivery Platform
Company
About UsOur LocationsOur PlatformsNewsCareersContact Us
LinkedInLinkedIn hoverYouTubeYouTube hoverXX hover
Copyright © 2026 Novogene Inc. All rights reserved.For Research Use Only. Not for Clinical Diagnostic Use.
Novogene AMEA
  • Novogene AMEA
  • Genomics
    • Human Whole Genome Sequencing
    • Plant and Animal Whole Genome Sequencing
    • Microbial Whole Genome Sequencing
    • Plant and Animal De novo Sequencing
    • Microbial De novo Sequencing
    • Shotgun Metagenomics Sequencing
    • Amplicon Sequencing
    • Whole Exome Sequencing
    Transcriptomics
    • mRNA Sequencing
    • Total RNA Sequencing
    • Full-Length Transcriptome Sequencing
    • Whole Transcriptome Sequencing
    • Small RNA Sequencing
    • Circular RNA Sequencing
    • Metatranscriptome Sequencing
    • Prokaryotic RNA Sequencing
    Single Cell & Spatial Omics
    • Single Cell Gene Expression
    • Single Cell Immune Profiling Sequencing
    • Single Cell Long Read Transcriptome
    • Visium HD Spatial Gene Expression
    • Stereo-Seq Spatial Gene Expression
    • Xenium In Situ Spatial Transcriptome
    Epigenomics
    • Whole Genome Bisulfite Sequencing (WGBS)
    • Directed DNA Methylation Sequencing (DM-Seq) NEW
    • Reduced Representation Bisulfite Sequencing (RRBS)
    • Chromatin Immunoprecipitation Sequencing (ChIP-seq)
    • RNA Immunoprecipitation Sequencing (RIP-seq)
    • Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq)

    Premade Library

    • Sequencing Only on Illumina Sequencer
    • Sequencing Only on PacBio Sequencer
    Proteomics and Metabolomics
    • Olink Proteomics
    • Quantitative Proteomics
    • Untargeted Metabolomics
  • PromotionsPromotions
    • Platforms
    • Automated Delivery Platform (Falcon)
    • Bioinformatics Analysis Tool (NovoMagic)
    • Customer Service System (CSS)
    • Brochures
    • Case Studies
    • Webinar
    • Blog
    • Sample Guidelines
    • Cancer Research
    • Immuno-oncology
    • Agrigenomics
    • Environment
    • Food Science
    • Human Microbiome
    • Plant and Animal Microbiome
    • Drug Discovery and Development
    • Rare and Complex Diseases
    • About Us
    • Our Locations
    • News
    • Careers
  • Contact UsContact Us

ServicesServices menu

SupportSupport menu

CompanyCompany menu

Services
Whole Genome SequencingDe novo SequencingAmplicon SequencingShotgun Metagenomic SequencingDirected DNA Methylation Sequencing (DM-Seq)mRNA SequencingSingle Cell Gene ExpressionVisium HD Spatial Gene ExpressionXenium In Situ Spatial TranscriptomeOlink ProteomicsUntargeted Metabolomics
Support
NovoMagic Bioinformatics Analysis ToolCustomer Service SystemFalcon Intelligent Delivery Platform
Company
About UsOur LocationsOur PlatformsNewsCareersContact Us
LinkedInLinkedIn hoverYouTubeYouTube hoverXX hover
Copyright © 2026 Novogene Inc. All rights reserved.For Research Use Only. Not for Clinical Diagnostic Use.
banner laptop bg
banner mobile bg

Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq)

Genome-wide profiling of chromatin accessibility to reveal regulatory elements and gene regulatory mechanisms.
Request a Quote
(Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq))
Request a Quote
(Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq))
OverviewOverview
BenefitsBenefits
ApplicationsApplications
SpecificationsSpecifications
ResourcesResources

ATAC-seq is a high-throughput sequencing method used to analyze genome-wide chromatin accessibility, which is crucial for understanding the global epigenetic regulation of gene expression. Chromatin accessibility refers to the extent to which nuclear macromolecules can interact with chromatinized DNA, enabling transcription and other biological processes. Consequently, ATAC-seq provides valuable insights into the genome’s regulatory landscape by identifying regions where DNA is accessible for binding by various cellular factors.

Benefits

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Benefits

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Applications

Capturing all open chromatin regions under specific space-time conditions, designed to evaluate genome-wide regulatory potential of research goals:

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Applications

Capturing all open chromatin regions under specific space-time conditions, designed to evaluate genome-wide regulatory potential of research goals:

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Specifications

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Specifications

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Demo Results

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

Demo Results

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

More Services

Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
mRNA Sequencing
(mRNA Sequencing)
mRNA Sequencing
(mRNA Sequencing)

More Services

Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
mRNA Sequencing
(mRNA Sequencing)
mRNA Sequencing
(mRNA Sequencing)
Background
Background

Ready to Start Project?

Our platform offers tailored solutions for

your unique experimental needs, ensuring a seamless experience from project design to data delivery.

 
 
 
 
 
 
 
 
 
 
Privacy PolicyCookie PolicyCareers
banner laptop bg
banner mobile bg

Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq)

Genome-wide profiling of chromatin accessibility to reveal regulatory elements and gene regulatory mechanisms.
Request a Quote
(Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq))
Request a Quote
(Assay for Transposase-Accessible Chromatin with Sequencing (ATAC-seq))
OverviewOverview
BenefitsBenefits
ApplicationsApplications
SpecificationsSpecifications
ResourcesResources

ATAC-seq is a high-throughput sequencing method used to analyze genome-wide chromatin accessibility, which is crucial for understanding the global epigenetic regulation of gene expression. Chromatin accessibility refers to the extent to which nuclear macromolecules can interact with chromatinized DNA, enabling transcription and other biological processes. Consequently, ATAC-seq provides valuable insights into the genome’s regulatory landscape by identifying regions where DNA is accessible for binding by various cellular factors.

Benefits

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Benefits

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Flexible Sample Receiving Strategies
Flexible Sample Receiving Strategies

Accepts both cells and tissues with low starting amounts.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Profound Experience
Profound Experience

Successfully completed hundreds of ATAC-seq projects as of 2023-2025.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Rapid and High Capacity
Rapid and High Capacity

Industry-leading turnaround time.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Comprehensive Bioinformatic Analysis
Comprehensive Bioinformatic Analysis

Provides publication-ready results and offers bioinformatic consultants for ATAC-seq data interpretation.

Applications

Capturing all open chromatin regions under specific space-time conditions, designed to evaluate genome-wide regulatory potential of research goals:

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Applications

Capturing all open chromatin regions under specific space-time conditions, designed to evaluate genome-wide regulatory potential of research goals:

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Deciphering Fundamental Biology

Profiling open chromatin in different cell state to decipher cell fate change during cell development, cell differentiation and cellular response.

Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Understanding Disease Mechanisms

Linking genetic variants to regulatory dysfunction, exploring gene functions in disease progression.


Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Advancing Drug Discovery and Therapeutics

Understanding the regulatory landscape change in response to drugs to reveal therapeutic efficacy and drug-resistance mechanism. The unique chromatin accessibility "signature" of a disease or drug response can be used as a diagnostic or prognostic tool.

Specifications

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Specifications

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sample Requirements

Sample amounts are listed for reference only. Download the Sample Requirements to learn more. For detailed information, please contact us with your customized requests.

Sample TypeRequired Amount (Qubit®)Shipping Conditions
Frozen Tissue≥ 50mg (100mg is recommended)Transport under dry ice conditions
Cryopreserved cell≥ 500k cells (1M is recommended),(post-thaw) viability >60%.Cryopreserved cells (in single cell suspension) should be shipped on dry ice.

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Sequencing and Analysis

Recommended data outputs and analysis contents displayed are for reference only. For detailed information, please contact us with your customized requests.

Sequencing PlatformIllumina NovaSeq Platform
Read LengthPaired-end 150 bp
Recommended Data Amount9-15 Gb per sample
Content of Data AnalysisData quality control
Mapping
Peak calling and statistic
Motif analysis
Peak annotation and distribution analysis
Differential analysis, GO and KEGG enrichment analysis.
Visualization of ATAC-seq data

Project Workflow

The Novogene ATAC-seq service comprises four steps: Sample preparation, library preparation, sequencing, and bioinformatics analysis. The workflow cannot be paused after sample thawing due to the nature of the initial samples (cells/tissues). Please contact us for more information about your ATAC-seq projects.


To guarantee the accuracy and reliability of sequencing data, Novogene audits every experimental step through quality control, fundamentally ensuring high-quality data output from sampling to the final data report. This commitment to high-quality data is essential for the correctness, comprehensiveness, and credibility of bioinformatics analysis.

Project Workflow

Demo Results

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

Demo Results

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

Image
Image
1/1
Distribution of the Reads Mapped to the Gene Body

Horizontal axis: relative position of the gene. Vertical axis reads density.

Image
Image
1/1
Genome Wide Distribution of Peaks

Horizontal axis is the coordinate of the peak in the chromosome. Vertical is the chromosome. Every blue line represents a peak.

Image
Image
1/1
Motif Analysis

The most significant 25 motifs of length 8, 10, 12, 14 were identified for each set of experiments.

More detailed information for each motif is available in the result file and the readme file.

Image
Image
1/1
Distribution of Peaks in Functional Regions

Distribution of peak in different functional area.

Image
Image
Image
Image
1/2
Enrichment Analysis

Left is a demo graph of GO term enrichment. Right is a demo graph of KEGG pathway enrichment.

More Services

Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
mRNA Sequencing
(mRNA Sequencing)
mRNA Sequencing
(mRNA Sequencing)

More Services

Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Chromatin Immunoprecipitation Sequencing (ChIP-seq)
(Chromatin Immunoprecipitation Sequencing (ChIP-seq))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
Whole Genome Bisulfite Sequencing (WGBS)
(Whole Genome Bisulfite Sequencing (WGBS))
mRNA Sequencing
(mRNA Sequencing)
mRNA Sequencing
(mRNA Sequencing)
Background
Background

Ready to Start Project?

Our platform offers tailored solutions for

your unique experimental needs, ensuring a seamless experience from project design to data delivery.

 
 
 
 
 
 
 
 
 
 
Privacy PolicyCookie PolicyCareers